ROC Meeting (2007) at Madison, WI

Annual RNA Society Conference

 

 

Presentations - Monday, May 28, 2007

Introduction to Open Biomedical Ontologies:

Presentation Audio
  • Thomas Bittner - "The OBO Foundry: Towards Gold Standard Terminology Resources in Biomedical Domain" 
 - .ppt
  - .wma

Backbone Conformation Working Group Presentation:

  • Jane Richardson et al. - "RNA Backbone: Consensus All-angle Conformers and Modular String Nomenclature"
 - .ppt
 - .wma
(~54 mins)
  • Kevin Keating - "Using Pseudotorsions to Predict the Consensus Rotamers"
 - .ppt
 - .wma
(~16 mins)
Base Stacking Presentations:
  • Francois Major
 ---
 - .wma
(~10 mins)
  • Craig Zirbel
 ---
 - .wma
(~22 mins)
  • Eli Hershkovits
 - .ppt
 - .wma
(~17 mins)
  • Dave Mathews - "Predicting Coaxial Stacking by Free Energy Minimization" 
- .ppt
 - .wma
(~19 mins)
Motif and Structural Presentations:
  • Eric Westhof - "Overview of RNA Motifs"
  - .pdf
  - .wma
(~47 mins)
  • Francois Major - "Modeling RNA Motifs by Graph-Grammars"
 - .ppt

 - .wma
  • Namhee Kim - "RagPools: RNA-As_Graph-Pools"
 - .ppt
 - .wma
  • Ali Mokdad - "Predicting the 3D Structure of RNA Motifs"
 - .ppt
 ---

RNA Alignment Working Group Presentation:

  • James Brown - "RNA Structure Alignment Ontology"
 - .pdf - .wma
(~25 mins)


Presentations - Tuesday, May 29, 2007

Formal Ontology:

  • Thomas Bittner - "Formal-Ontological Foundations for the RNA Ontology"
 - .pdf - .wma
(~1h39mins)
  • Karen Eilbeck - "SO meets RnaO"
- .ppt ---
  • Kristian Rother -
 - .ppt - .wma
(~17 mins)
  • Rob Knight - "Data Representation: Techniques and Trade-offs"
 - .ppt - .wma
(~29 mins)

Structure Mapping:

  • Dave Mathews - "Structure Mapping Working Group"
 - .ppt - .wma
(~25 mins)

RNA - Ligand, Protein, Ion, etc. Interaction:

  • Fareed Aboul-ela - "Design of Small Molecule Drugs Targeted to RNA"
 - .ppt - .wma
(~25 mins)